| Phylum | Order | Family/Clade | Genus + Species | Strain | Ref/Source | Data available | |
| CHYTRIDIO-
MYCOTA (100) |
Neocallimastigales (7) | Anaeromyces sp. JB-1999 | ? | Wubah | no | ||
| Caecomyces communis | ? | Wubah | no | ||||
| Cyllamyces aberensis | ? | Gareth Griffith | no | ||||
| Neocallimastix frontalis | ? | Wubah | no | ||||
| Neocallimastix patriciarum | ? | Wubah | no | ||||
| Orpinomyces joyonii | ? | Wubah | no | ||||
| Piromonas communis | ? | Wubah | no | ||||
| Chytridiales (59) | Chytridium Clade (15) | Asterophlyctis sarcoptoides | JEL186 | Longcore | SSU | ||
| cellophane chytrid | JEL155 | Longcore | EF1a, SSU | ||||
| Chytridium confervae | 81-1 | Berkeley collection | SSU | ||||
| Chytridium olla | ? | Longcore | no | ||||
| Chytriomyces annulatus | JEL114 | Longcore | SSU | ||||
| Chytriomyces appendiculatus | JEL135 | Longcore | no | ||||
| Chytriomyces hyalinus | ? | Powell | no | ||||
| Chytriomyces spinosus | JEL53 | Longcore | SSU | ||||
| Entophlyctis luteolus | JEL129 | Longcore | SSU | ||||
| Entophlyctis sp. | JEL336 | Longcore | no | ||||
| Obelidium mucronatum | JEL57 | Longcore | SSU | ||||
| Phlyctorhiza endogena | JEL80 | Longcore | EF1a, SSU | ||||
| Physocladia obscura | JEL137 | Longcore | SSU | ||||
| Podochytrium dentatum | JEL30 | Longcore | SSU | ||||
| Siphonaria peterseni | JEL102 | Longcore | no | ||||
| Nowakowskiella Clade (9) | Catenochytridium sp. | JEL145 | Longcore | SSU | |||
| Cladochytrium replicatum | JEL38 | Longcore | SSU | ||||
| Diplochytridium lagenarium | JEL72 | Longcore | EF1a, SSU | ||||
| Endochytrium sp. | JEL49 | Longcore | SSU | ||||
| Nephrochytrium aurantium | JEL 36 | Longcore | no | ||||
| Nephrochytrium sp. | JEL125 | Longcore | SSU | ||||
| Nowakowskiella elegans | BK50-1 | Berkeley collection | SSU | ||||
| Nowakowskiella hemisphaerospora | BK85-6 | Berkeley collection | SSU | ||||
| Septochytrium variabile | JEL191 | Longcore | SSU | ||||
| Rhizophydium Clade (19) | Batrachochytrium dendrobatidis | JEL197 | Longcore | EF1a, SSU | |||
| Chytriomyces angularis | JEL45 | Longcore | SSU | ||||
| Entophlyctis helioformi | JEL326 | Longcore | no | ||||
| Entophlyctis sp. | JEL122 | Longcore | SSU | ||||
| multiple axes | JEL142 | Longcore | SSU | ||||
| Phlyctochytrium planicorne | JEL47 | Longcore | no | ||||
| Rhizophlyctis harderi | JEL171 | Longcore | EF1a, SSU | ||||
| Rhizophydium carpophilum | JEL134 | Longcore | no | ||||
| Rhizophydium chaetiferum | JEL39 | Longcore | EF1a, SSU | ||||
| Rhizophydium from Haematococcus (Israel) | JEL314 | Duke | SSU | ||||
| Rhizophydium patellarium | JEL01 | Longcore | no | ||||
| Rhizophydium sp. | F16 | Porter | SSU | ||||
| Rhizophydium sp. JEL136 | JEL136 | Longcore | EF1a, SSU | ||||
| Rhizophydium sphaerotheca | JEL299 | Longcore | SSU | ||||
| Rhizophydium sphaerotheca | JEL08 | Longcore | SSU | ||||
| Rhizophydium subangulosum | JEL281 | Longcore | no | ||||
| Rhizophydium subangulosum | Virginia 3 | Powell | no | ||||
| Zygorhizidium affluens | ? | ? | no | ||||
| Zygorhizidium planktonicum | ? | ? | no | ||||
| Lacustromyces Clade (5) | Karlingiomyces sp. | JEL93 | Longcore | SSU | |||
| Karlingiomyces sp. | JEL223 | Longcore | no | ||||
| Lacustromyces hiemalis | JEL31 | Longcore | SSU | ||||
| multiple rhizoids | JEL207 | Longcore | SSU | ||||
| Polychytrium aggregatum | JEL190 | Longcore | SSU | ||||
| Uncertain affinities (11) | Achylogeton entophytum | ? | ? | no | |||
| Coelomycidium simulii | ARSEF218 | ARSEF | no | ||||
| Coenomyces sp. | ? | Longcore | no | ||||
| Megachytrium westonii | ? | ? | no | ||||
| Mitochytridium ramosum | ? | ? | no | ||||
| Polyphagus euglenae | ? | Powell | no | ||||
| Siphonaria variabilis | ? | ? | no | ||||
| Synchytrium endobioticum | ? | Porter | no | ||||
| Synchytrium macrosporum | ? | Porter | no | ||||
| Thalassochytrium gracilariopsidis | ? | Longcore | no | ||||
| Truittella setifera | ? | ? | no | ||||
| Monoblepharidales (9) | Gonapodya sp. | JEL183 | Longcore | SSU | |||
| Harpochytrium sp. | JEL94 | Longcore | EF1a, SSU | ||||
| Harpochytrium sp. | JEL196 | Longcore | no | ||||
| Hyaloraphidium curvatum | SAG 235-1 | F. Lang | SSU | ||||
| Monoblepharella elongata | CR91 | Berkeley collection | SSU | ||||
| Monoblepharella sp. | MM15 | Longcore | no | ||||
| Monoblepharis insignis | BK 59-7 | Berkeley collection | EF1a, SSU | ||||
| Monoblepharis macrandra | ? | Ben Hall | rpb1 | ||||
| Oedogoniomyces | CR84 | Longcore | no | ||||
| Blastocladiales (9) | Allomyces macrogynus | ATCC 46923 | ATCC | SSU | |||
| Blastocladia pringsheimii | ? | ? | no | ||||
| Blastocladiella emersonii | ATCC 22665 | ATCC | LSU, SSU | ||||
| Blastocladiopsis parva | ? | ? | no | ||||
| Catenaria anguillulae | JEL194 | Longcore | SSU | ||||
| Catenophlyctis sp. | JEL298 | Longcore | SSU | ||||
| Coelomomyces stegomyiae | ? | Whisler | SSU | ||||
| Physoderma maydis | ? | ? | SSU | ||||
| Sorochytrium milnesiophthora | ? | ? | no | ||||
| Spizellomycetales (16) | Catenomyces sp. | ? | Longcore | SSU | |||
| Caulochytrium protostelioides | ? | Powell | no | ||||
| Gaertneriomyces semiglobiferus | BK91-10 | Berkeley collection | SSU | ||||
| Kochiomyces dichotomus | JEL121 | Longcore | ITS | ||||
| Olpidium brassicae | ? | Porter | no | ||||
| Powellomyces hirtus | F11 | Porter | SSU | ||||
| Powellomyces variabilis | BK85-1 | Berkeley collection | SSU | ||||
| Rhizophlyctis rosea | BK 57-5 | Berkeley collection | EF1a, SSU | ||||
| Rhizophlyctis rosea | BK47-07 | Berkeley collection | SSU | ||||
| Rhizophlyctis rosea | JEL193 | Longcore | no | ||||
| Rozella allomycis | ? | UGA | no | ||||
| Spizellomyces kniepii | F22 | UGA | SSU | ||||
| Spizellomyces plurigibbosus | JEL210 | Longcore | ITS2 | ||||
| Spizellomyces pseudodichotomotu | JEL132 | Longcore | no | ||||
| Spizellomyces punctatus | BR11 | Barr collection? | no | ||||
| Triparticalcar sp. | ? | Barr collection? | no | ||||
| Zygo-
mycota (140) |
Mucorales (69) | Mucoraceae (30) | Absidia blakesleeana | NRRL1304 | O'Donnell | EF1a, LSU, SSU | |
| Absidia repens | NRRL1336 | O'Donnell | EF1a, LSU, SSU | ||||
| Actinomucor elegans | NRRL3104 | O'Donnell | EF1a, LSU, SSU | ||||
| Amylomyces rouxii | NRRL3139 | O'Donnell | EF1a, LSU, SSU | ||||
| Apophysomyces elegans | NRRL22325 | O'Donnell | EF1a, LSU, SSU | ||||
| Circinella umbellata | NRRL1351 | O'Donnell | EF1a, LSU, SSU | ||||
| Gongronella butleri | NRRL1340 | O'Donnell | EF1a, LSU, SSU | ||||
| Halteromyces radiatus | NRRL6197 | O'Donnell | EF1a, LSU, SSU | ||||
| Mucor circinelloides f. lusitanicus | NRRL3631 | O'Donnell | EF1a, LSU, SSU | ||||
| Mucor hiemalis f. hiemalis | NRRL3624 | O'Donnell | EF1a, LSU, SSU | ||||
| Mucor indicus | NRRL28634 | O'Donnell | EF1a, LSU, SSU | ||||
| Mucor mucedo | NRRL3635 | O'Donnell | EF1a, LSU, SSU | ||||
| Mucor racemosus | NRRL3640 | O'Donnell | EF1a, LSU, SSU | ||||
| Mucor ramosissimus | NRRL3042 | O'Donnell | EF1a, LSU, SSU | ||||
| Mucor recurvus var. indicus | NRRL3247 | O'Donnell | EF1a, LSU, SSU | ||||
| Parasitella parasitica | NRRL2501 | O'Donnell | EF1a, LSU, SSU | ||||
| Phycomyces blakesleeanus | NRRL1465 | O'Donnell | EF1a, LSU, SSU | ||||
| Protomycocladus faisalabadensis | NRRL22826 | O'Donnell | EF1a, LSU, SSU | ||||
| Rhizomucor miehei | ATCC 26282 | ATCC | ITS, LSU, SSU | ||||
| Rhizomucor pusillus | NRRL2543 | O'Donnell | EF1a, LSU, SSU | ||||
| Rhizopus azygosporus | NRRL28627 | O'Donnell | EF1a, LSU, SSU | ||||
| Rhizopus microsporus var. microsporus | NRRL28775 | O'Donnell | EF1a, LSU, SSU | ||||
| Rhizopus microsporus var. oligosporus | NRRL2710 | O'Donnell | EF1a, LSU, SSU | ||||
| Rhizopus oryzae | NRRL28631 | O'Donnell | EF1a, LSU, SSU | ||||
| Rhizopus stolonifer | NRRL1477 | O'Donnell | EF1a, LSU, SSU | ||||
| Spinellus fusiger | NRRL22323 | O'Donnell | EF1a, LSU, SSU | ||||
| Sporodiniella umbellata | NRRL20824 | O'Donnell | EF1a, LSU, SSU | ||||
| Syzygites megalocarpus | NRRL6288 | O'Donnell | EF1a, LSU, SSU | ||||
| Thermomucor indicae-seudaticae | NRRL6429 | O'Donnell | EF1a, LSU, SSU | ||||
| Zygorhynchus heterogamus | NRRL1489 | O'Donnell | EF1a, LSU, SSU | ||||
| Pilobolaceae (3) | Pilaira anomala | NRRL2526 | O'Donnell | EF1a, LSU, SSU | |||
| Pilobolus umbonatus | NRRL6349 | O'Donnell | EF1a, LSU, SSU | ||||
| Utharomyces epallocaulus | NRRL3168 | O'Donnell | EF1a, LSU, SSU | ||||
| Choanephoraceae (2) | Blakeslea trispora | NRRL2456 | O'Donnell | EF1a, LSU, SSU | |||
| Choanephora cucurbitarum | NRRL2744 | O'Donnell | EF1a, LSU, SSU | ||||
| Radiomycetaceae (2) | Hesseltinella vesiculosa | NRRL3301 | O'Donnell | EF1a, LSU, SSU | |||
| Radiomyces spectabilis | NRRL2753 | O'Donnell | EF1a, LSU, SSU | ||||
| Saksenaeaceae (1) | Saksenaea vasiformis | NRRL2443 | O'Donnell | EF1a, LSU, SSU | |||
| Cunninghamellaceae (3) | Cunninghamella bertholletiae | NRRL6436 | O'Donnell | EF1a, LSU, SSU | |||
| Cunninghamella echinulata | NRRL1382 | O'Donnell | EF1a, LSU, SSU | ||||
| Cunninghamella polymorpha | NRRL6441 | O'Donnell | LSU, SSU | ||||
| Thamnidiaceae (11) | Backusella circina | NRRL2446 | O'Donnell | EF1a, LSU, SSU | |||
| Backusella ctenidia | NRRL6238 | O'Donnell | EF1a, LSU, SSU | ||||
| Cokeromyces recurvatus | NRRL2243 | O'Donnell | EF1a, LSU, SSU | ||||
| Dicranophora fulva | NRRL22204 | O'Donnell | EF1a, LSU, SSU | ||||
| Ellisomyces anomalus | NRRL2749 | O'Donnell | EF1a, LSU, SSU | ||||
| Fennellomyces linderi | NRRL2342 | O'Donnell | EF1a, LSU, SSU | ||||
| Phascolomyces articulosus | NRRL2880 | O'Donnell | EF1a, LSU, SSU | ||||
| Pirella circinans | NRRL2402 | O'Donnell | EF1a, LSU, SSU | ||||
| Thamnidium elegans | NRRL2467 | O'Donnell | EF1a, LSU, SSU | ||||
| Thamnostylum piriforme | NRRL6240 | O'Donnell | EF1a, LSU, SSU | ||||
| Zychaea mexicana | NRRL6237 | O'Donnell | EF1a, LSU, SSU | ||||
| Syncephalastraceae (2) | Syncephalastrum monosporum var. pluriproliferum | NRRL22812 | O'Donnell | EF1a, LSU, SSU | |||
| Syncephalastrum racemosum | NRRL2496 | O'Donnell | EF1a, LSU, SSU | ||||
| Mortierellaceae (9) | Dissophora decumbens | NRRL22416 | O'Donnell | EF1a, LSU, SSU | |||
| Echinosporangium transversale | NRRL3116 | O'Donnell | EF1a, LSU, SSU | ||||
| Micromucor ramannianus | NRRL5844 | O'Donnell | EF1a, LSU, SSU | ||||
| Mortierella chlamydospora | NRRL2769 | O'Donnell | EF1a, LSU, SSU | ||||
| Mortierella multidivaricata | NRRL6456 | O'Donnell | EF1a, LSU, SSU | ||||
| Mortierella polycephala | NRRL22890 | O'Donnell | EF1a, LSU, SSU | ||||
| Mortierella verticillata | NRRL6337 | O'Donnell | EF1a, LSU, SSU | ||||
| Umbelopsis isabellina | NRRL1757 | O'Donnell | EF1a, LSU, SSU | ||||
| Umbelopsis nana | NRRL22420 | O'Donnell | EF1a, LSU, SSU | ||||
| Gilbertellaceae (1) | Gilbertella persicaria | NRRL2357 | O'Donnell | EF1a, LSU, SSU | |||
| Mycotyphaceae (2) | Benjaminiella poitrasii | NRRL2845 | O'Donnell | EF1a, LSU, SSU | |||
| Mycotypha microspora | NRRL1572 | O'Donnell | EF1a, LSU, SSU | ||||
| Chaetocladiaceae (3) | Chaetocladium brefeldii | NRRL1349 | O'Donnell | EF1a, LSU, SSU | |||
| Chaetocladium jonesii | NRRL2343 | O'Donnell | EF1a, LSU, SSU | ||||
| Dichotomocladium elegans | NRRL6236 | O'Donnell | EF1a, LSU, SSU | ||||
| Dimargaritales (3) | Dimargaritaceae (3) | Dimargaris bacillispora | NRRL 2808 | O'Donnell | SSU | ||
| Dispira cornuta | NRRL A-16 1010 | O'Donnell | SSU | ||||
| Tieghemiomyces parasiticus | NRRL 2924 | O'Donnell | SSU | ||||
| Kickxellales (9) | Kickxellaceae (9) | Coemansia braziliensis | NRRL 1566 | O'Donnell | LSU, SSU | ||
| Coemansia reversa | NRRL 1564 | O'Donnell | LSU, SSU | ||||
| Dipsacomyces acuminosporus | NRRL 2925 | O'Donnell | LSU, SSU | ||||
| Kickxella alabastrina | NRRL 2693 | O'Donnell | LSU, SSU | ||||
| Linderina pennispora | NRRL 3781 | O'Donnell | LSU, SSU | ||||
| Martensiomyces pterosporus | NRRL 2642 | O'Donnell | LSU, SSU | ||||
| Spirodactylon aureum | NRRL 2810 | O'Donnell | LSU, SSU | ||||
| Spiromyces aspiralis | NRRL 22631 | O'Donnell | LSU, SSU | ||||
| Spiromyces minutus | NRRL 3067 | O'Donnell | LSU, SSU | ||||
| Endogonales (1) | Endogone pisiformis | ? | ? | no | |||
| Emtomophthorales (23) | Entomophthoraceae (12) | Entomophaga aulicae | ARSEF51 | ARSEF | no | ||
| Entomophaga maimaiga | ARSEF 1400 | ARSEF | no | ||||
| Entomophthora chromaphidis | ARSEF 1860 | ARSEF | SSU | ||||
| Entomophthora muscae | ARSEF3074 | ARSEF | no | ||||
| Entomophthora planchoniana | ARSEF 6251 | ARSEF | SSU | ||||
| Eryniopsis ptycopterae | AFSEF2535 | ARSEF | no | ||||
| Furia ithacensis | ARSEF1339 | ARSEF | SSU | ||||
| Massospora cicadina | ARSEF374 | ARSEF | no | ||||
| Pandora kondoiensis | ARSEF825 | ARSEF | SSU | ||||
| Pandora neoaphidis | ARSEF2572 | ARSEF | no | ||||
| Strongwellsea castrans | ARSEF3282 | Jensen | no | ||||
| Zoophthora radicans | ARSEF2698 | ARSEF | no | ||||
| Ancylistaceae (9) | Ancylistes closterii | ? | ? | no | |||
| Completoria complens | ? | ? | no | ||||
| Conidiobolus coronatus | NRRL28638 | O'Donnell | LSU, SSU | ||||
| Conidiobolus incongruus | NRRL28636 | O'Donnell | LSU, SSU | ||||
| Conidiobolus lamprauges | NRRL28637 | O'Donnell | LSU, SSU | ||||
| Conidiobolus obscurus | ARSEF74 | ARSEF | no | ||||
| Conidiobolus pseudapiculatus | ARSEF1662 | ARSEF | no | ||||
| Conidiobolus thromboides | ARSEF 115 | ARSEF | SSU | ||||
| Macrobiotophthora vermicola | ARSEF 650 | ARSEF | SSU | ||||
| Basidiobolaceae (2) | Basidiobolus haptosporus | NRRL28635 | O'Donnell | LSU, SSU | |||
| Basidiobolus ranarum | NRRL 20525 | O'Donnell | LSU, SSU | ||||
| Zoopagales (11) | Zoopagaceae (3) | Stylopage rhabdoides | ? | ? | no | ||
| Zoopage thamnospira | ? | ? | no | ||||
| Zoophagus insidians | ? | O'Donnell | SSU | ||||
| Cochlonemaceae (2) | Amoebophilus sicyosporus | ? | ? | no | |||
| Cochlonema verrucosum | ? | ? | no | ||||
| Piptocephalidaceae (4) | Kuzuhaea moniliformis | NRRL 13723 | O'Donnell | SSU | |||
| Piptocephalis corymbifera | NRRL 2385 | O'Donnell | SSU | ||||
| Syncephalis depressa | NRRL 22627 | O'Donnell | SSU | ||||
| Syncephalis hypogena | ATCC64689 | ATCC | no | ||||
| Sigmoideomycetaceae (1) | Thamnocephalis sphaerospora | NRRL 22810 | O'Donnell | SSU | |||
| Helicocephalidaceae (1) | Rhopalomyces elegans | NRRL 2980 | O'Donnell | SSU | |||
| Glomales (11) | Acaulospora longula | CL372 | INVAM | no | |||
| Archaeosporus leptoticha | FL184 | INVAM | no | ||||
| Archaeosporus trappei | AU219 | INVAM | no | ||||