D. References

Alexopoulos, C.J., C.W. Mims, and M. Blackwell. 1996. Introductory Mycology, 4th ed. John Wiley & Sons, N.Y.

Anderson, J. B., D. M. Petsche, and M. L. Smith. 1987. Restriction fragment length polymorphisms in biological species of Armillaria mellea. Mycologia 79: 69-76.

Baldauf S. L. and W. F. Doolittle. 1997. Origin and evolution of the slime molds (Mycetozoa). Proc. Nat. Acad. Sci. USA 94: 12007-12012.

Baldauf, S. L., A. J. Roger, I. Wnek-Siefert, and W. F. Doolittle. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290: 972-977.

Baldauf, S. L., and J. D. Palmer. 1993. Animals and fungi are each otherÌs closest relatives: congruent evidence from multiple proteins. Proc. Nat. Acad. Sci. USA 90: 11558-11562.

Barker, F. K., and Lutzoni F. 2002. The utility of the incongruence length difference test. Systematic Biology. (in press).

Barnett, J. A., R. W. Payne, and D. Yarrow. 1990. Yeasts: characteristics and identification. Cambridge University Press, Cambridge.

Barr, D.J.S. 2001. Chytridiomycota. In McLaughlin, D.J., E.G. McLaughlin, and P.A. Lemke (eds.). The Mycota. VIIA. Systematics and Evolution. Springer Verlag. Pp. 93-112.

Barr, D.J.S. 1992. Evolution and Kingdoms of Organisms from the Perspective of a Mycologist. Mycologia 84:1-11.

Bartnicki-Garcia, S. 1970. Cell wall composition and other biochemical markers in fungal phylogeny. In J.B. Harborne (ed.) Phytochemical Phylogeny, Academic Press. Pp. 81-103.

Bartnicki-Garcia, S. 1987. The cell wall: a crucial structure in fungal evolution. In Rayner, A.D.M. et al. (eds.) Evolutionary Biology of the Fungi, Cambridge Univ. Press. Pp. 389-403.

Bauer, R., F. Oberwinkler, and K. Vanky. 1997. Ultrastructural markers and systematics in smut fungi and allied taxa. Can. J. Bot. 75: 1273-1314.

Bauer, R., D. Begerow, F. Oberwinkler, M. Piepenbring, and M. L. Berbee. 2001. Ustilaginomycetes. pp 57-84 in: The MycotaVIIB, Systematics and Evolution (D. J. McLaughlin, E. G. McLaughlin, and P. A. Lemke, eds). Springer-Verlag, Berlin.

Beckett, A., I. B. Heath, and D. J. McLaughlin. 1974. An Atlas of Fungal Ultrastructure. Longman Group.

Bellemere, A. 1994. Asci and ascospores in asacomycete systematics. In Hawksworth, D. (ed.) Ascomycete systematics: problems and perspectives in the nineties. Plenum Press, N.Y. Pp. 111-126.

Bennett, J.W., and J. Arnold. 2001. Genomics for Fungi. Pp. 267-297 In: The Mycota VIII. Biology of the fungal Cell (ed. by Howard and Gow). Springer-Verlag, Berlin.

Benny, G. L., and K. OÌDonnell. 2000. Amoebidium parasiticum is a protozoan, not a Trichomycete. Mycologia 92:1133-1137.

Berbee, M.L. 1998. Loculoascomycete origins and evolution of filamentous ascomycete morphology based on 18S rRNA gene sequence data. Molec. Biol. Evol. 13: 462-470.

Berbee, M.L., Pirseyedi, M. and Hubbard, S. 1999. Cochliobolus phylogenetics and the origin of known, highly virulent pathogens, inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences. Mycologia. 91: 964-977.

Berbee, M. L., and J. W. Taylor. 2001. Fungal molecular evolution: Gene trees and geologic time. pp 229-245 in: The Mycota VIIB Systematics and Evolution (D. J. McLaughlin, E. G. McLaughlin, and P. A. Lemke, eds). Springer-Verlag, Berlin.

Berbee, M. L., and J. W. Taylor. 1993. Dating the evolutionary radiations of the true fungi. Can. J. Bot. 71:1114-1127.

Bhattacharya, D., Lutzoni, F., Reeb, V., Simon, D., Nason, J., Fernandez, F. 2000. Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes. Molecular Biology and Evolution 17:1971-1984

Binder, M., and D. S. Hibbett. 2002. Higher level phylogenetic relationships of homobasidiomycetes inferred from four rDNA regions. Molecular Phylogenetics and Evolution 22:76-90.

Blanz, P.A., and M. Gottschalk. 1986. Systematic position of Septobasidium, Graphiola and other basidiomycetes as deduced on the basis of their 5S ribosomal RNA nucleotide sequences. System. Appl. Microbiol. 8: 121-127.

Boidin, J., J. Mugnier, and R. Canales. 1998. Taxonomie moleculaire des Aphyllophorales. Mycotaxon 66: 445-491.

Bruns, T. D., R. Vilgalys, S. M. Barns, D. Gonzalez, D. S. Hibbett, D. J. Lane, L. Simon, S. Stickel, T. M. Szaro, W. G. Weisburg, and M. L. Sogin. 1992. Evolutionary relationships within the fungi: analyses of nuclear small subunit RNA sequences. Mol. Phylogenet. Evol. 1:231-241.

Bruns, T. D., T. M. Szaro, M. Gardes, K. W. Cullings, J. Pan, D. L. Taylor, and Y. Li. 1998. A sequence database for the identification of ectomycorrhizal fungi by sequence analysis. Mol. Ecol. 7:257-272.

Bruns, T., T. White, and J. Taylor. 1991. Fungal molecular systematics. Annu. Rev. Ecol. Syst. 22: 525-564.

Bull, J. J., J. P. Huelsenbeck, C. W. Cunningham, D. L. Swofford, and P. J. Waddell. 1993. Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42:384-397.

Cavalier-Smith, T., MTEP Allsop, and E.E. Chao. 1994. Thraustochytrids are chromists, not fungi: 18S rRNA signatures of heterokonta. Philos. Trans. Roy. Soc. Lond. Ser. B 339: 139-146.

ClÈmenÁon, H. 1997. Anatomie der Hymenomyceten. F. Fluck-Wirth.

Depriest, P. T., N. V. Ivanova, D. Fahselt, V. Alstrup, and A. Gargas. 2000. Sequences of psychrophilic fungi amplified from glacier-preserved ascolichens. Can. J. bot. 78: 1450-1459.

Cunningham, C. W. 1997a. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods. Syst. Biol. 46:464-478.

Cunningham, C. W. 1997b. Can three incongruence tests predict when data should be combined? Mol. Biol. Evol. 14:733-740

Dolan, R.W., Yahr, R., E.S. Menges, M.D. Halfhill. 1999. Conservation implications of genetic variation in three rare species endemic to Florida rosemary scrub. American Journal of Botany 86(11): 1556-1562.

Dolphin, K., R. Belshaw, C.D.L. Orme, and D.L.J. Quicke. 2000. Noise and incongruence: interpreting results of the incongruence length difference test. Mol. Phylogenet. Evol. 17: 401-406.

Dowton, M., and A.D. Austin. 2002. Increased congruence does not necessarily indicate increased phylogenetic accuracy?the behavior of the ILD test in mixed-model analyses. Systematic Biology (in press).

Edman, J. C., J. A. Kovacs, H. Masur, D. V. Santi, H. J. Elwood, and M. L. Sogin. 1988. Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the fungi. Nature 334: 519-522.

Eriksson, O.E., H.-O. Baral, R.S. Currah, K. Hansen, C.P. Kurtzman, G. Rambold, and T. Laess¯e. 2001. pp 1-88: in Outline of Fungi Û 2001. Myconet UmeÂ, UmeÂ, University Sweden. http://www.umu.se/myconet/Myconet.html.

Farris, J.S., M. K”llersj–, A.G. Kluge, and C. Bult. 1995a. Constructing a significance test for incongruence. Syst. Biol. 44: 570-572.

Farris, J.S., M. K”llersj–, A.G. Kluge, and C. Bult. 1995b. Testing significance of incongruence. Cladistics 10: 315-319.

Fell, J. W., T. Boekhout, A. Fonseca, and J. P. Sampaio. 2001. Basidiomycetous yeasts. pp 3-35 in: The Mycota VIIB Systematics and Evolution (D. J. McLaughlin, E. G. McLaughlin, and P. A. Lemke, eds). Springer-Verlag, Berlin

Forget, L., J. Ustinova, Z. Wang, V. A. R. Huss, and B. F. Lang. 2002. The "colorless green alga" Hyaloraphidium curvatum: a linear mitochondrial genome, tRNA editing, and an evolutionary link to lower fungi. Mol. Biol. Evol. 19:310-319.

Gargas, A., P.T. DePriest, M. Grube, and A. Tehler. 1995. Multiple origins of lichen symbioses in fungi suggested by SSU rDNA phylogeny. Science 268: 1492-1495.

Graham, S.W., J.R. Kohn, B.R. Morton, J.E. Eckenwalder and S.C.H. Barrett. 1998. Phylogenetic congruence and discordance among one morphological and three molecular data sets from Pontederiaceae. Syst. Biol. 47: 545-567.

Guadet, J., J. Julien, J. Lafay, and Y. Brygoo. 1989. Phylogeny of some Fusarium species determined by large-subunit rRNA sequence comparisons. Mol. Biol. Evol. 6: 227-242.

Gernandt, D.S., J.L. Platt, J.K. Stone, J.W. Spatafora, A. Holst-Jensen, R.C. Hamelin, and L.M. Kohn. 2001. Phylogenetics of Helotiales and Rhytismatales based on partial small subunit nuclear ribosomal DNA sequences. Mycologia 93: 915-933.

Hawksworth, D. L., P. M. Kirk, B. C. Sutton, and D. N. Pegler. 1995. Ainsworth & BisbyÌs Dictionary of the Fungi. 8th Edition. CAB International, Wallingford, UK.

Hawksworth, DL. 1991. The fungal dimension of biodiversity: magnitude, significance and conservation. Myol. Res. 95: 641-655.

Hawksworth, DL. 2001. The magnitude of fungal diversity: the 1.5 million species estimate revisited. Myol. Res. 105: 1422-1432.

Heath, I. B. 1980. 1980b. Variant mitoses in lower eukaryotes: indicators of evolution of mitosis? Int. Rev. Cytol. 64:1-80.

Heath, I. B. 1986. Nuclear division: a marker for protist phylogeny? Progress Protistology 1: 115-162.

Heckman, D. S., D. M. Geiser, B. R. Eidell, R. L. Stauffer, N. L. Kardos and S. B. Hedges. 2001. Molecular evidence for the early colonization of land by fungi and plants. Science 293: 1129-1133.

Hibbett, D. S. 1992. Ribosomal RNA and fungal systematics. Trans. Mycol. Soc. Japan. 33: 533-556.

Hibbett, D. S., and R. G. Thorn. 2001. Basidiomycota: Homobasidiomycetes. Pp. 121-168 in: The Mycota, vol. VII part B, Systematics and Evolution (D. J. McLaughlin, E. G. McLaughlin, and P. A. Lemke, eds.). Springer Verlag.

Hibbett, D. S., E. M. Pine, E. Langer, G. Langer, and M. J. Donoghue. 1997. Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proc. Natl. Acad. Sci. USA 94:12002-12006.

Hibbett, D. S., L.-B. Gilbert, and M. J. Donoghue. 2000. Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes. Nature 407: 506-508.

Hibbett, D.H. and R.G. Thorn. 2001. Basidiomycota: Homobasidiomycetes. In McLaughlin, D.J., E.G. McLaughlin, and P.A. Lemke (eds.). The Mycota. VIIB. Systematics and Evolution. Springer Verlag. Pp. 121-168.

Holst-Jensen, A., L.M. Kohn, and T. Schumacher. 1997. Nuclear rDNA phylogeny of the Sclerotiniaceae. Mycologia 89: 885-899.

Horton, T.R., T.D. Bruns, and V.T. Parker. 1999. Ectomycorrhizal fungi associated with Arctostaphylos contribute to Pseudotsuga menziesii establishment. Can. J. Bot. 77: 93-102.

Huelsenbeck, J.P. and J.J. Bull. 1996. A likelihood ratio test to detect conflicting phylogenetic signal. Syst. Biol. 45: 92-98.

Huelsenbeck, J.P., J.J. Bull and C.W. Cunningham. 1996. Combining data in phylogenetic analysis. TREE 11: 152-157

Jacobson, K. M., P. J. Jacobson, and O. K. Miller, Jr. 1999. The autecology of Battarea stevenii in ephemeral rivers of southwestern Africa. Mycol Res. 103: 9-17.

James, T. Y., D. Porter, C. A. Leander, R. Vilgalys, and J. E. Longcore. 2000. Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics. Can. J. Bot. 78: 336-350.

Jensen, A. B., A. Gargas, J. Eilenberg, and S. Rosendahl. 1998. Relationships of the insect-pathogenic order Entomophtorales (Zygomycota, Fungi) based on phylogenetic analyses of nuclear small subunit ribosomal DNA sequences (SSU rDNA). Fungal Genet. Biol. 24:325-334.

Kauff, F. and Lutzoni, F. 2002. Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits. Molecular Phylogenetics and Evolution (in press).

Keeling, P. J., M. A. Luker, and J. D. Palmer. 2000. Evidence from beta-tubulin phylogeny that microsporidia evolved from within the fungi. Mol. Biol. Evol. 17:23-31.

Kimbrough, J. W. 1994. Septal ultrastructure and ascomycete systematics. In Hawksworth, D. (ed.) Ascomycete systematics: problems and perspectives in the nineties. Plenum Press, N.Y. Pp. 127-141.

Kohlmeyer, J., and E. Kohlmeyer. 1979. Marine Mycology?The Higher Fungi. Academic Press, New York.

Kohn, LM, D. M. Petsche, S. R. Bailey, L. A. Novak, and J.B. Anderson. 1988. Restriction fragment length polymorphisms in nuclear and mitochondrial DNA of Sclerotinia species. Phytopathology 78: 1047-1051.

Kretzer A. M., and T. D. Bruns. 1999. Use of atp6 in fungal phylogenetics: An example from the Boletales. Mol. Phyl. Evol. 13:483-492.

Landvik, S., O. E. Eriksson, and M.L. Berbee. 2001. Neolecta - a fungal dinosaur? Evidence from b -tubulin amino acid sequences. Mycologia 93: 1151-1163.

Langer, E. Phylogeny of non-gilled and gilled basidiomycetes: DNA sequence inference, ultrastructure and comparative moprhology. Habilitationschrift. Tubingen University, Tubingen. In press.

Leipe, D. D., P. O. Wainwright, J. H. Gunderson, D. Porter, D. J. Patterson, F. Valois, S. Himmerich, and M. L. Sogin. 1994. The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis. Phycologia 33: 369-377.

Leuchtmann, A. and C.L. Schardl. 1998. Mating compatibility and phylogenetic relationships among two new species of Epichloe and other congeneric European species. Mycol Res 102: 1169-1182.

Liu, Y.J., S. Whelen, and B.D. Hall. 1999. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Mol Biol Evol 16: 1799-1808.

L¸, H. S. and D. J. McLaughlin. 1995. A light and electron microscopic study of mitosis in the clamp connection of Auricularia auricula-judae. Can. J. Bot. 73: 315-332.

Lutzoni, F. 1997. Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets. Systematic Biology 46: 373-406.

Lutzoni, F. and F.K. Barker. 1999. Sampling confidence envelopes of phylogenetic trees for combinability testing: A reply to Rodrigo. Syst. Biol. 48: 596-603.

Lutzoni, F. and R. Vilgalys. 1995b. Integration of morphological and molecular data sets in estimating fungal phylogenies. Canadian Journal of Botany 73(Suppl. 1): S649-S659.

Lutzoni, F., Pagel, M., Reeb, V. 2001. Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411:937-940.

Lumbsch, H. T., N. Wirtz, R. Lindemuth, I. Schmitt. 2002. Higher level phylogenetic relationships of euascomycetes (Pezizomycotina) inferred from a combined analysis of nuclear and mitochondrial sequence data. Mycological Progress 1:57-70.

Mason-Gamer R.J., E.A. Kellogg. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Syst Biol 45: 524-545.

Matheny, P.B., Yajuan J. Liu, Joseph F. Ammirati, and Benjamin D. Hall. 2002. Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales). Am. J. Bot. 89:688-698.

McLaughlin, D. J. 1982. Ultrastructure and cytochemistry of basidial and basidiospore development. In: In Wells, K. and E. K. Wells (eds.). Basidium and Basidiocarp. Springer Verlag. . Pp. 37-74.

McLaughlin, D.J., M.E. Berres and L.J. Szabo. 1995a. Molecules and morphology in basidiomycete phylogeny. Can. J. Bot. 73 (Suppl. 1):S684-S692.

McLaughlin, D.J., E.M. Frieders and H. L¸. 1995b. A microsopist's view of heterobasidiomycete phylogeny. Stud.Mycol. 38:91-109.

McLaughlin, D. J., E. G. McLaughlin, and P. A. Lemke. 2001. The Mycota VIIA: Systematics and Evolution. Springer-Verlag, New York.

Moncalvo, J. M., R. Vilgalys, S. A. Redhead, J. E. Johnson, T. Y. James, M. C. Aime, V. Hofstetter, S. J. W. Verduin, E. Larsson, T. J. Baroni, R. G. Thorn, S. Jacobsson, H. ClÈmenÁon, and O. K. Miller Jr. 2002. One hundred and seventeen clades of Euagarics. Mol. Phyl. Evol. In press.

Moncalvo, J.-M., F. M. Lutzoni, S. A. Rehner, J. Johnson, and R. Vilgalys. 2000. Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Syst. Biol. 49: 278-305.

Nagahama, T., H. Sato, M. Shimuzu, and J. Sugiyama. 1995. Phylogenetic divergence of the entomorphthoralean fungi: evidence from nuclear 18S ribosomal RNA gene sequences. Mycologia 87: 203-209.

Nixon, K. C. 1999. The Parsimony Ratchet, a new method for rapid parsimony analysis. Cladistics 15:407-414.

O'Brien, H., Jackson, J., Johnson, J., Parrent, J., Moncalvo, J.-M. and Vilgalys, R. 2002. Fungal community analysis using environmental genomics. Inoculum 53:48.

O'Donnell, K., F. M. Lutzoni, T. J. Ward, and G. L. Benny . 2001. Evolutionary relationships among mucoralean fungi (Zygomycota): Evidence for family polyphyly on a large scale. Mycologia 93:286-296.

OÌDonnell, K., E. Cigelnik, and H. I Nirenberg. 1998. Molecular systematics and phylogeography of the Gibberella fujikuroi species complex. Mycologia 90: 465-493.

Paquin, B., M.-J. Laforest, L. Forget, I. Roewer, Z. Wang, J. Longcore, and F. Lang. 1997. The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression. Curr. Genet. 31:380-395.

Pfister, D.H. and J.W. Kimbrough. 2001. Discomycetes. In McLaughlin, D.J., E.G. McLaughlin, and P.A. Lemke (eds.). The Mycota. VIIA. Systematics and Evolution. Springer Verlag. Pp. 257-281.

Prillinger, H., F. Oberwinkler, C. Umile, K. Tlachac, R. Bauer, C. Dorfler, and E. Taufratzhofer. 1993, Analysis of cell wall carbohydrates (neutral sugars) from ascomycetous and basidiomycetous yeasts with and without derivatization. J. Gen. Appl. Microbiol. 39: 1-34.

Pryer, K.M., H. Schneider, A.R. Smith, R. Cranfill, P.G. Wolf, J.S. Hunt and S.D. Sipes. 2001. Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants. Nature 409: 618 Û 622.

Qiu, Y.L., L. Jungho, F. Bernasconi-Quadroni, D.E. Soltis, P.S. Soltis, M. Zanis, E.A. Zimmer, Z. Chen, V. Savolainen and M.W. Chase. 1999. The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes. Nature 402: 404-407.

Roberson, R. W. and M. S. Fuller. 1988. Ultrastructural aspects of the hyphal tip of Sclerotium rolfsii preserved by freeze substitution. Protoplasma 146: 143-149.

Rodrigo, A.G., M. Kelly-Borges, P.R. Bergquist and P.L. Bergquist. 1993. A randomisation test of the null hypothesis that two cladograms are sample estimates of a parametric phylogenetic tree. New Zealand J. Bot. 31: 257-268.

Saiki, R. D. Gelfand, S. Stoffel, S. Scharf, R. Higuchi, G. Horn, K. Mullis, and H. Erlich. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239: 487-494.

Saunders, G. W., D. Potter, and R. A. Anderson. 1997. Phylogenetic affinities of the Sarcinochrysidales and Chysomeridales (Heterokonta) based on analyses of molecular and combined data. J. Phycol. 33: 310318.

Schardl, C.L., A. Leuchtmann, H.-F. Tsai, M.A. Collett, and D.M. Watt. 1994. Origin of a fungal symbiont of perennial ryegrass by interspecies hybridization of a mutualist with the ryegrass choke pathogen EpichloÎ typhina. Genetics 136: 1307-1317.

Soltis, P.S., D.E. Soltis and M.W. Chase. 1999. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 402: 402-404.

Spatafora, J. W., B. Volkmann-Kohlmeyer, and J. Kohlmeyer. 1998. Independent terrestrial origins of the Halosphaeriales (marine Ascomycota). Am. J. Bot. 85: 1569-1580.

Spatafora, J. W. 1995. Ascomal evolution among filamentous ascomycetes: evidence from molecular data. Can. J. Bot. S811-S815.

Suh, S.-G. and M. Blackwell. 1999. Molecular phylogeny of the cleistothecial fungi placed in Cephalothecaceae and Pseudeurotiaceae. Mycologia 91: 836-848.

Sung, G.-H., J.W. Spatafora, R. Zare, K.T. Hodge, and W. Gams. 2001. A revision of Verticillium sect. Prostrata. II. Phylogenetic analyses of SSU and LSU nuclear rDNA sequences from anamorphs and teleomorphs of the Clavicipitaceae. Nova Hedwigia 72: 29-46.

Sugiyama, J. 1998. Relatedness, phylogeny, and evolution of the fungi. Mycoscience 39:487-511.

Swann, E.C., E.M. Frieders, and D.J. McLaughlin. 1999. Microbotryum, Kriegeria, and the changing paradigm in basidiomycete classification. Mycologia 91: 51-66.

Swann, E.C., E.M. Frieders, and D.J. McLaughlin. 2001. Urediniomycetes. In McLaughlin, D.J., E.G. McLaughlin, and P.A. Lemke (eds.). The Mycota. VIIB. Systematics and Evolution. Springer Verlag. Pp. 37-56.

Swann, E. C., and J. W. Taylor. 1993. Higher taxa of basidiomycetes: an 18S rRNA gene perspective. Mycologia 85:923-936.

Swann, E. C., and J. W. Taylor. 1995. Phylogenetic perspectives on basidiomycete systematics: evidence from the 18S rRNA gene. Can. J. Bot. 73: S862-S868.

Swofford, D. L. 1998. PAUP* Phylogenetic analysis using Parsimony (* and other methods). Sinauer Associates, Sunderland, Massachusetts.

Tanabe, Y., K. O'Donnell, M. Saikawa, and J. Sugiyama. 2000. Molecular phylogeny of parasitic Zygomycota (Dimargaritales, Zoopagales) based on nuclear small subunit ribosomal DNA sequences. Mol. Phylogenet. Evol. 16:253-262.

Taylor J . W., D. J. Jacobson, S. Kroken, T. Kasuga, D. M. Geiser, D. S. Hibbett, and M. C. Fisher. 2000. Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31: 21-32

Taylor, J. W., J. Spatafora, K. OÌDonnell, F. Lutzoni, T. James, D. S. Hibbett, D. Geiser, T. D. Bruns, and M. Blackwell. The Kingdom Fungi. In: Companion volume to "Assembling the Tree of Life: Science, Relevance and Challenges" symposium, American Museum of Natural History May 30-June 1, 2002 (J. Cracraft and M. J. Donoghue, eds.). In preparation.

Tehler, A. 1988. A cladistic outline of the Eumycota. Cladistics 4: 227-277.

Tehler, A., J.S. Farris, D.L. Lipscomb, and M. K”llersjo. 2000. Phylogenetic analyses of the fungi based on large rDNA data sets. Mycologia 92: 459-474.

Van Dover CL, and RW Lichtwardt. 1986. A new trichomycete commensal with a galatheid squat lobster from deep-sea hydrothermal vents. Biol. Bull. 171:461-468.

Vandenkoornhuyse, P., S. L. Baldauf, C. Leyval, J. Straczek, and J. P W. Young. 2002. Extensive fungal diversity in plant roots. Science 295: 2051.

Waddell, P.J., H. Kishino and R. Ota. 2000. Rapid evaluation of the phylogenetic congruence of sequence data using likelihood ratio tests. Mol. Biol. Evol. 17: 1988-1992.

Wainright, P. O., G. Hinkle, M. L. Sogin and S. K. Stickel. 1993/ Monophyletic origins of the Metazoa: an evolutionary link with fungi." Science 260: 340-342.

Wells, K. and R.J. Bandoni. 2001. Heterobasidiomycetes. In McLaughlin, D.J., E.G. McLaughlin, and P.A. Lemke (eds.). The Mycota. VIIB. Systematics and Evolution. Springer Verlag. Pp. 85-120.

White T. J., T. D. Bruns, S. Lee, and J. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp 315?322 in Innis M. A., D. H. Gelfand, J. J. Sninsky, and T. J. White, eds. PCR protocols, a guide to methods and applications. San Diego, California: Academic Press.